genus and species name, Frateuria aurantia, for strains IF0 ,,, and to Strain IF0 was found to be a strain of. Gluconobacter. Frateuria aurantia DSM (Project ID: ). Product: High Quality Draft. Proposal Name: GEBA Proposal (Proposal ID: ). Project PI: Jonathan Eisen. Potassium-mobilizing bacterial strain Frateuria aurantia was examined for Bacterial strain F. aurantia was able to enhance potassium uptake efficiently in.
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The genus was named after the Belgian microbiologist Joseph Frateur [ 1 ]; the species epithet is derived from the Neo-Latin adjective aurantiareferring to the gold-yellow color of the strain on MYP agar [ 1 ].
The initial Newbler assembly consisting aurahtia 36 contigs in one scaffold was converted into a phrap [ 34 ] assembly by making fake reads from the consensus, to collect the read pairs in the paired end library.
K Sol B from Frateuria aurantia :: Agri Life
Genes with function prediction proteins. Mol Biol Evol ; The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation. Acknowledgements We would like to gratefully acknowledge the help of Markus Kopitz for growing F. Cell cycle control, cell division, chromosome partitioning.
Symbion-K, Bio-Fertilizer, Potash Solubilizing, Bacteria Frateuria aurantia.
Validation of publication of new names and new combinations previously effectively published outside the IJSEM. Here we present a summary classification and a set of features for F. TAs [ 19 ]. Genome Res ; Carbohydrate transport and metabolism. Biopreserv Biobank ; 9: Phylogenetic tree highlighting the position of F.
TAS [ 18 ]. Syst Appl Microbiol ; The draft assembly was based on Carbohydrate metabolism by Acetobacter species.
A rapid bootstrap algorithm for the RAxML web servers. General ffateuria prediction only. Coenzyme transport and metabolism. Biol J Linn Soc Lond ; Han C, Chain P. Besides trace amounts of diploptene and rearranged compounds like fernene [ 3 ], the main lipids isolated from DSM T are iso -branched fatty acids and triterpenoids of the hopane family, such as bacteriohopanetetrol and derived hopanoid.
From outside to aurania Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.
Stand Genomic Sci ; 1: The distribution of genes into COGs functional categories is presented in Table 4. An effective tool for using ultra short reads in microbial genome assembly and finishing. All general aspects of library construction and sequencing can be found at the JGI website [ 33 ]. Graphical map of the chromosome. Amino acid transport and metabolism.
Nucleic Acids Res ; Illumina GAii sequencing data 2, Petersburg State University, St. Table 1 Classification and general features of F.
K-Mobil (Potash Mobilizing bacteria): Frateuria aurantia
The organism also produces ubiquinone Q8 [ 27 ]. A Gene Prediction Improvement Pipeline for microbial genomes. They are oxidase positive and catalase negative [ 1 ]; physiological features and antibiotic susceptibilities were aurantja in great detail in [ 1 ].
The genome project is deposited in the Genomes On Line Database [ 14 ] and the complete genome sequence is deposited in GenBank. Oxidative activity for various carbohydrates. RNA processing and modification.
This organism was selected fraturia sequencing on the basis of its phylogenetic position [ 28 ], and is part of the G enomic E ncyclopedia of Bacteria and Archaea project [ 29 ]. Int J Syst Evol Microbiol ; Cells grow well at pH 3.
Intracellular trafficking and secretion, and vesicular transport. J Mol Biol ;